SNP Report
Basic Infomation
| Name | rs6074043 dbSNP |
|---|---|
| Location | chr:20,44781380 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037526 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13042545 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13045469 | 0.94[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13045771 | 1.00[JPT][hapmap] |
| rs2425761 | 1.00[JPT][hapmap] |
| rs2425769 | 1.00[JPT][hapmap] |
| rs2425770 | 1.00[JPT][hapmap] |
| rs6017746 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6074041 | 0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6074042 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6074047 | 0.83[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014