SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10920180	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10920181	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10920187	1.00[CEU][hapmap]
rs12141661	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs12567686	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16848462	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2001410	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2275862	0.81[CHB][hapmap]
rs2799686	1.00[CEU][hapmap]
rs2799690	0.88[CEU][hapmap]
rs3753997	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs3753999	1.00[CEU][hapmap]
rs3767546	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs45509695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57550325	0.85[EUR][1000 genomes]
rs6427901	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7521796	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7535327	0.88[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7544061	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs946639	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
TNNT2	Distal transcriptional regulation
TNNT2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)