SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10920180	0.88[CEU][hapmap]
rs10920187	0.89[CEU][hapmap]
rs11805972	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12088790	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16848462	0.88[CEU][hapmap]
rs2275863	0.88[CEU][hapmap]
rs2799686	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3753997	0.88[CEU][hapmap]
rs3753999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6427901	0.88[CEU][hapmap]
rs6679578	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71493200	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs946639	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNNT2	Proximal transcriptional regulation
LAD1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)