SNP Report
Basic Infomation
| Name | rs2799686 dbSNP |
|---|---|
| Location | chr:1,201347315 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920180 | 1.00[CEU][hapmap] |
| rs10920181 | 1.00[CEU][hapmap] |
| rs10920187 | 1.00[CEU][hapmap] |
| rs11805972 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12088790 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12141661 | 0.82[CEU][hapmap] |
| rs12567686 | 1.00[CEU][hapmap] |
| rs1341629 | 1.00[CEU][hapmap] |
| rs16848462 | 1.00[CEU][hapmap] |
| rs2275863 | 1.00[CEU][hapmap] |
| rs2799690 | 0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3753997 | 1.00[CEU][hapmap] |
| rs3753999 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs3767546 | 1.00[CEU][hapmap] |
| rs3820427 | 1.00[CHB][hapmap] |
| rs6427901 | 1.00[CEU][hapmap] |
| rs6679578 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71493200 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7521796 | 1.00[CEU][hapmap] |
| rs7535327 | 0.86[CEU][hapmap] |
| rs946639 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes] |
| rs947374 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Proximal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014