SNP Report
Basic Infomation
| Name | rs45509695 dbSNP |
|---|---|
| Location | chr:1,201328913 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920180 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10920181 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12141661 | 0.92[EUR][1000 genomes] |
| rs12567686 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16848462 | 0.98[EUR][1000 genomes] |
| rs2001410 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2275863 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3753997 | 0.98[EUR][1000 genomes] |
| rs3767546 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs57550325 | 0.85[EUR][1000 genomes] |
| rs6427901 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7521796 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7535327 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7544061 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
| TNNT2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014