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rVarBase
SNP Report
Basic Infomation
Name
rs57550325  
dbSNP
Location
chr:1,201317675
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920180
0.84[EUR][1000 genomes]
rs10920181
0.84[EUR][1000 genomes]
rs12117515
0.82[EUR][1000 genomes]
rs12141661
0.86[EUR][1000 genomes]
rs12567686
0.84[EUR][1000 genomes]
rs16848462
0.84[EUR][1000 genomes]
rs2001410
0.84[EUR][1000 genomes]
rs2275863
0.85[EUR][1000 genomes]
rs3753997
0.84[EUR][1000 genomes]
rs3767546
0.84[EUR][1000 genomes]
rs45509695
0.85[EUR][1000 genomes]
rs6427901
0.84[EUR][1000 genomes]
rs7521796
0.84[EUR][1000 genomes]
rs7535327
0.84[EUR][1000 genomes]
rs7544061
0.84[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
TNNT2
Distal transcriptional regulation
PKP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)