SNP Report
Basic Infomation
| Name | rs12117515 dbSNP |
|---|---|
| Location | chr:1,201310436 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920169 | 0.84[GIH][hapmap] |
| rs10920173 | 0.84[GIH][hapmap] |
| rs10920180 | 0.86[JPT][hapmap] |
| rs10920181 | 0.86[JPT][hapmap] |
| rs1104755 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs12120834 | 0.88[CEU][hapmap];0.87[GIH][hapmap];0.82[EUR][1000 genomes] |
| rs12141661 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12564577 | 1.00[JPT][hapmap] |
| rs12567686 | 0.86[JPT][hapmap] |
| rs1524754 | 1.00[CHB][hapmap] |
| rs16848325 | 0.84[GIH][hapmap] |
| rs16848334 | 0.84[GIH][hapmap] |
| rs16848403 | 1.00[CEU][hapmap] |
| rs16848462 | 0.86[JPT][hapmap] |
| rs3730238 | 1.00[JPT][hapmap] |
| rs3730240 | 1.00[JPT][hapmap] |
| rs3753997 | 0.86[JPT][hapmap] |
| rs3753999 | 1.00[CEU][hapmap] |
| rs3767546 | 0.85[CEU][hapmap];0.85[JPT][hapmap] |
| rs57550325 | 0.82[EUR][1000 genomes] |
| rs6427901 | 0.86[JPT][hapmap] |
| rs6690976 | 1.00[CEU][hapmap] |
| rs7521796 | 0.85[JPT][hapmap] |
| rs7535327 | 0.86[JPT][hapmap] |
| rs946639 | 0.86[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FAM123C | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014