SNP Report
Basic Infomation
| Name | rs12120834 dbSNP |
|---|---|
| Location | chr:1,201301111 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10047138 | 0.88[EUR][1000 genomes] |
| rs10920169 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs10920173 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs1104755 | 1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs12117515 | 0.88[CEU][hapmap];0.87[GIH][hapmap];0.82[EUR][1000 genomes] |
| rs12120467 | 0.88[EUR][1000 genomes] |
| rs12122545 | 0.88[EUR][1000 genomes] |
| rs12136453 | 0.88[EUR][1000 genomes] |
| rs12141661 | 0.85[CEU][hapmap] |
| rs12143423 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1341629 | 0.88[EUR][1000 genomes] |
| rs1341944 | 0.82[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1626760 | 0.88[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1628711 | 0.88[EUR][1000 genomes] |
| rs16848325 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs16848334 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs16848403 | 0.88[CEU][hapmap] |
| rs1722741 | 0.88[EUR][1000 genomes] |
| rs1779291 | 0.88[EUR][1000 genomes] |
| rs3753999 | 0.82[CEU][hapmap] |
| rs3767546 | 1.00[CHB][hapmap] |
| rs6427898 | 0.88[EUR][1000 genomes] |
| rs6427899 | 0.88[EUR][1000 genomes] |
| rs6669708 | 0.88[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs6690976 | 0.88[CEU][hapmap] |
| rs7556140 | 0.86[EUR][1000 genomes] |
| rs9287109 | 0.88[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs947376 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Proximal transcriptional regulation |
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014