SNP Report

Basic Infomation

Name	rs1104755 dbSNP
Location	chr:1,201300025
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10047138	0.91[EUR][1000 genomes]
rs10920169	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs10920173	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs12117515	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes]
rs12120467	0.91[EUR][1000 genomes]
rs12120834	1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes]
rs12122545	0.91[EUR][1000 genomes]
rs12136453	0.91[EUR][1000 genomes]
rs12141661	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12143423	0.81[GIH][hapmap];0.85[JPT][hapmap]
rs12563097	0.82[JPT][hapmap]
rs12563114	0.82[JPT][hapmap]
rs12564416	0.82[JPT][hapmap]
rs12564577	0.85[JPT][hapmap]
rs12568177	0.82[JPT][hapmap]
rs12568802	0.82[JPT][hapmap]
rs1341629	0.91[EUR][1000 genomes]
rs1341944	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1524754	1.00[CHB][hapmap]
rs1626760	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs1628711	0.91[EUR][1000 genomes]
rs16848325	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs16848334	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs16848403	0.88[CEU][hapmap]
rs1722741	0.91[EUR][1000 genomes]
rs1779291	0.91[EUR][1000 genomes]
rs2996494	0.82[JPT][hapmap]
rs3730238	0.85[JPT][hapmap]
rs3730240	0.85[JPT][hapmap]
rs3753999	0.82[CEU][hapmap]
rs6427898	0.91[EUR][1000 genomes]
rs6427899	0.91[EUR][1000 genomes]
rs6427900	0.81[GIH][hapmap]
rs6669708	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs6690976	0.88[CEU][hapmap]
rs7556140	0.89[EUR][1000 genomes]
rs9287109	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs947376	0.81[GIH][hapmap];0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PKP1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)