SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10920169	0.81[GIH][hapmap]
rs10920173	0.81[GIH][hapmap]
rs10920174	0.92[AFR][1000 genomes]
rs1104755	0.81[GIH][hapmap];0.85[JPT][hapmap]
rs1105331	0.85[ASW][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs12120834	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12143423	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[ASN][1000 genomes]
rs16848325	0.81[GIH][hapmap]
rs16848334	0.81[GIH][hapmap]
rs3767546	1.00[CHB][hapmap]
rs3795629	0.85[ASW][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)