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rVarBase
SNP Report
Basic Infomation
Name
rs16848403  
dbSNP
Location
chr:1,201315182
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1104755
0.88[CEU][hapmap]
rs12117515
1.00[CEU][hapmap]
rs12120834
0.88[CEU][hapmap]
rs12141661
1.00[CEU][hapmap]
rs3753999
1.00[CEU][hapmap]
rs3767546
0.85[CEU][hapmap]
rs6690976
1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946639
0.86[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
TNNT2
Distal transcriptional regulation
PKP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
C1orf106
seeQTL
RBPMS
seeQTL
CXCL11
seeQTL