SNP Report

Basic Infomation

Name	rs2231622 dbSNP
Location	chr:20,44003790
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2231615	1.00[AMR][1000 genomes]
rs2231623	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2231627	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2231628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2233090	1.00[CHB][hapmap]
rs2233092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2233105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2233106	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2233899	1.00[MEX][hapmap]
rs2743304	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2743337	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs55767946	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56367627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57342479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57690690	0.88[AFR][1000 genomes]
rs6032148	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs60958897	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104216	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs73907920	0.88[AFR][1000 genomes]
rs73907924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907928	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907940	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907941	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907943	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907948	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SYS1	Proximal transcriptional regulation
PIGT	Distal transcriptional regulation
ENSG00000234011	Distal transcriptional regulation
TP53TG5	Distal transcriptional regulation
SYS1	RNA binding protein mediated regulation
SYS1-DBNDD2	RNA binding protein mediated regulation
TP53TG5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)