SNP Report
Basic Infomation
| Name | rs2233105 dbSNP |
|---|---|
| Location | chr:20,43922584 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17333103 | 1.00[CHB][hapmap] |
| rs2231622 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap] |
| rs2231623 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs2231628 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap] |
| rs2233090 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs2233091 | 1.00[CHD][hapmap];1.00[GIH][hapmap] |
| rs2233092 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap] |
| rs2233106 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs2743304 | 1.00[CHB][hapmap];1.00[MEX][hapmap] |
| rs2743307 | 1.00[CHD][hapmap] |
| rs2743337 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap] |
| rs6032148 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6073652 | 1.00[CHD][hapmap];1.00[MEX][hapmap] |
| rs6094095 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCL | Distal transcriptional regulation |
| STK4-AS1 | Distal transcriptional regulation |
| STK4 | Distal transcriptional regulation |
| PABPC1L | Distal transcriptional regulation |
| MATN4 | Distal transcriptional regulation |
| MATN4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014