SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11905068	1.00[CEU][hapmap]
rs16990042	1.00[AFR][1000 genomes]
rs17333103	1.00[CHB][hapmap]
rs2231619	1.00[AFR][1000 genomes]
rs2231622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2231623	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2233090	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2233091	1.00[CHD][hapmap]
rs2233092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2233105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2233106	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2233899	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2252731	1.00[LWK][hapmap]
rs2743304	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs2743307	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs2743337	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs58873161	0.87[AFR][1000 genomes]
rs6017601	1.00[GIH][hapmap]
rs6032148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs6104216	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
PIGT	Distal transcriptional regulation
SYS1	Distal transcriptional regulation
SYS1-DBNDD2	Distal transcriptional regulation
ENSG00000234011	Distal transcriptional regulation
DBNDD2	Distal transcriptional regulation
TP53TG5	Distal transcriptional regulation
SYS1	RNA binding protein mediated regulation
SYS1-DBNDD2	RNA binding protein mediated regulation
TP53TG5	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)