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rVarBase
SNP Report
Basic Infomation
Name
rs11905068  
dbSNP
Location
chr:20,43990404
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2231628
1.00[CEU][hapmap]
rs2233092
1.00[CEU][hapmap]
rs2743337
1.00[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
SYS1
Proximal transcriptional regulation
SYS1-DBNDD2
Proximal transcriptional regulation
TP53TG5
Distal transcriptional regulation
DBNDD2
Distal transcriptional regulation
NCOA5
Distal transcriptional regulation
ENSG00000234011
Distal transcriptional regulation
PIGT
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)