SNP Report
Basic Infomation
| Name | rs2230400 dbSNP |
|---|---|
| Location | chr:2,102626148 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10205500 | 1.00[CEU][hapmap] |
| rs13408303 | 1.00[YRI][hapmap] |
| rs28385682 | 1.00[CEU][hapmap] |
| rs3917226 | 1.00[CEU][hapmap] |
| rs3917236 | 1.00[CEU][hapmap] |
| rs3917271 | 1.00[CEU][hapmap] |
| rs3917312 | 1.00[CEU][hapmap] |
| rs3917327 | 1.00[CEU][hapmap] |
| rs4850992 | 1.00[ASW][hapmap];0.90[AMR][1000 genomes] |
| rs4851524 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6713939 | 1.00[CEU][hapmap] |
| rs6759556 | 1.00[CEU][hapmap] |
| rs7562706 | 1.00[CEU][hapmap] |
| rs7596051 | 1.00[CEU][hapmap] |
| rs7606834 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| IL18R1 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014