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rVarBase
SNP Report
Basic Infomation
Name
rs4850992  
dbSNP
Location
chr:2,102603862
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13407465
0.87[EUR][1000 genomes]
rs2230400
1.00[ASW][hapmap];0.90[AMR][1000 genomes]
rs4851503
0.87[EUR][1000 genomes]
rs4851520
0.85[YRI][hapmap]
rs4851524
1.00[ASW][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes]
rs56349254
0.80[AMR][1000 genomes]
rs6731732
0.87[EUR][1000 genomes]
rs72991242
0.87[EUR][1000 genomes]
rs72991252
0.87[EUR][1000 genomes]
rs7560560
0.87[EUR][1000 genomes]
rs7560764
0.87[EUR][1000 genomes]
rs9967668
0.87[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
IL1R2
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
IL18R1
seeQTL