SNP Report
Basic Infomation
| Name | rs9967668 dbSNP |
|---|---|
| Location | chr:2,102487862 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10175849 | 0.89[YRI][hapmap] |
| rs10205500 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13407465 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13430871 | 0.88[ASW][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap] |
| rs4850992 | 0.87[EUR][1000 genomes] |
| rs4851503 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55735247 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs6731732 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6744704 | 0.93[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs72991242 | 1.00[EUR][1000 genomes] |
| rs72991252 | 1.00[EUR][1000 genomes] |
| rs7560560 | 1.00[EUR][1000 genomes] |
| rs7560764 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs7597122 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP4K4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TLE6 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014