SNP Report
Basic Infomation
| Name | rs198462 dbSNP |
|---|---|
| Location | chr:11,61524119 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827215 | 0.82[JPT][hapmap] |
| rs12274157 | 0.81[JPT][hapmap] |
| rs198460 | 0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs198461 | 0.96[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs198464 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs198465 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs198472 | 0.85[LWK][hapmap];0.80[YRI][hapmap] |
| rs198473 | 0.80[YRI][hapmap] |
| rs198475 | 0.85[LWK][hapmap];0.80[YRI][hapmap] |
| rs198476 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2240287 | 0.82[JPT][hapmap] |
| rs3825036 | 0.82[JPT][hapmap] |
| rs520987 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs628993 | 0.81[JPT][hapmap] |
| rs7925523 | 0.82[JPT][hapmap] |
| rs883724 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256428 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| ENSG00000124915 | RNA binding protein mediated regulation |
| MYRF | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014