SNP Report
Basic Infomation
| Name | rs198475 dbSNP |
|---|---|
| Location | chr:11,61526071 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230796 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs198460 | 0.81[AFR][1000 genomes] |
| rs198461 | 0.83[LWK][hapmap];0.86[YRI][hapmap] |
| rs198462 | 0.85[LWK][hapmap];0.80[YRI][hapmap] |
| rs198471 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs198472 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs198473 | 1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs198476 | 0.87[LWK][hapmap];0.83[MKK][hapmap] |
| rs400075 | 0.94[EUR][1000 genomes] |
| rs695186 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000124915 | Proximal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| MYRF | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014