SNP Report
Basic Infomation
| Name | rs12274157 dbSNP |
|---|---|
| Location | chr:11,61477647 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827215 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs198462 | 0.81[JPT][hapmap] |
| rs198464 | 0.81[JPT][hapmap] |
| rs2097853 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2238001 | 0.95[JPT][hapmap] |
| rs2240286 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2240287 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3741252 | 0.94[ASN][1000 genomes] |
| rs3825036 | 1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4963255 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4963390 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59200224 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59371352 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60399071 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60507107 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72918042 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7925523 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs883724 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PSME2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014