SNP Report
Basic Infomation
| Name | rs2238001 dbSNP |
|---|---|
| Location | chr:11,61524507 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827215 | 0.95[JPT][hapmap] |
| rs12274157 | 0.95[JPT][hapmap] |
| rs198476 | 0.83[JPT][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs2240286 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2240287 | 0.91[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3741252 | 0.81[ASN][1000 genomes] |
| rs3825036 | 0.87[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes] |
| rs4963255 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4963390 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7925523 | 0.95[JPT][hapmap];0.80[TSI][hapmap] |
| rs883724 | 0.95[JPT][hapmap];0.87[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256428 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| ENSG00000124915 | RNA binding protein mediated regulation |
| MYRF | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014