SNP Report
Basic Infomation
| Name | rs3825036 dbSNP |
|---|---|
| Location | chr:11,61516476 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827215 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12274157 | 1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs198462 | 0.82[JPT][hapmap] |
| rs198464 | 0.81[ASW][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap] |
| rs2097853 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2238001 | 0.87[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes] |
| rs2240286 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2240287 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3741252 | 0.99[ASN][1000 genomes] |
| rs4963255 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4963390 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs59200224 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59371352 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60399071 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs60507107 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72918042 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7925523 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs883724 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000124915 | Proximal transcriptional regulation |
| MYRF | Proximal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| ENSG00000124915 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014