SNP Report

Basic Infomation

Name	rs16990345 dbSNP
Location	chr:20,44165852
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 179)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10485456	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12479606	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12479783	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12479865	0.89[AMR][1000 genomes]
rs12480391	0.89[ASN][1000 genomes]
rs12480392	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12480402	0.89[ASN][1000 genomes]
rs12480626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12480997	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12481030	0.89[ASN][1000 genomes]
rs12481362	0.89[ASN][1000 genomes]
rs12481374	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1569613	0.89[ASN][1000 genomes]
rs1569614	0.89[ASN][1000 genomes]
rs1569616	0.89[ASN][1000 genomes]
rs16990390	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17348421	0.89[ASN][1000 genomes]
rs17433181	0.89[ASN][1000 genomes]
rs1977096	0.89[ASN][1000 genomes]
rs2064273	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064274	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231830	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231832	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231833	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231834	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231835	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231836	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231837	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2231838	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231841	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231844	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250860	0.89[ASN][1000 genomes]
rs2272956	0.89[ASN][1000 genomes]
rs2272957	0.85[ASN][1000 genomes]
rs2294558	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868303	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2868305	0.89[ASN][1000 genomes]
rs2868306	0.89[ASN][1000 genomes]
rs2868307	0.89[ASN][1000 genomes]
rs2868308	0.89[ASN][1000 genomes]
rs2868309	0.89[ASN][1000 genomes]
rs2903786	0.89[ASN][1000 genomes]
rs2903787	0.89[ASN][1000 genomes]
rs34621239	0.86[AMR][1000 genomes]
rs3817887	0.89[ASN][1000 genomes]
rs4278989	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4302272	0.89[ASN][1000 genomes]
rs4608588	1.00[EUR][1000 genomes]
rs4810457	0.89[ASN][1000 genomes]
rs4812908	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812910	0.96[ASN][1000 genomes]
rs4812911	0.96[ASN][1000 genomes]
rs4812912	0.96[ASN][1000 genomes]
rs4812919	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4812920	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4812925	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4812941	1.00[EUR][1000 genomes]
rs4812942	1.00[EUR][1000 genomes]
rs55642155	0.89[ASN][1000 genomes]
rs56312640	0.89[ASN][1000 genomes]
rs56366144	0.85[ASN][1000 genomes]
rs57015374	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57094822	0.85[ASN][1000 genomes]
rs57263161	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57700915	0.89[ASN][1000 genomes]
rs57911170	0.85[ASN][1000 genomes]
rs58384175	0.89[ASN][1000 genomes]
rs59190933	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59279561	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017600	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017601	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017602	0.96[ASN][1000 genomes]
rs6017603	0.96[ASN][1000 genomes]
rs6017604	0.96[ASN][1000 genomes]
rs6017605	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017606	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017607	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017608	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017609	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017610	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6017612	0.89[ASN][1000 genomes]
rs6017613	0.89[ASN][1000 genomes]
rs6017614	0.89[ASN][1000 genomes]
rs6017615	0.89[ASN][1000 genomes]
rs6017616	0.89[ASN][1000 genomes]
rs6017617	0.85[ASN][1000 genomes]
rs6017618	0.89[ASN][1000 genomes]
rs6017619	0.89[ASN][1000 genomes]
rs6017620	0.89[ASN][1000 genomes]
rs6017621	0.89[ASN][1000 genomes]
rs6017625	0.89[ASN][1000 genomes]
rs6017626	0.89[ASN][1000 genomes]
rs6032280	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6032281	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032287	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032288	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032289	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032290	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032291	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032293	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032294	0.92[ASN][1000 genomes]
rs6032295	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6032296	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032300	0.89[ASN][1000 genomes]
rs6032301	0.89[ASN][1000 genomes]
rs6032302	0.89[ASN][1000 genomes]
rs6032303	0.89[ASN][1000 genomes]
rs6032305	0.89[ASN][1000 genomes]
rs6032306	0.85[ASN][1000 genomes]
rs6032307	0.89[ASN][1000 genomes]
rs6032309	0.89[ASN][1000 genomes]
rs6032310	0.89[ASN][1000 genomes]
rs6032311	0.89[ASN][1000 genomes]
rs6032312	0.89[ASN][1000 genomes]
rs6032313	0.89[ASN][1000 genomes]
rs6032314	0.89[ASN][1000 genomes]
rs6032315	0.89[ASN][1000 genomes]
rs6032316	0.89[ASN][1000 genomes]
rs6032317	0.89[ASN][1000 genomes]
rs6032318	0.89[ASN][1000 genomes]
rs6032319	0.85[ASN][1000 genomes]
rs6032321	0.89[ASN][1000 genomes]
rs6032322	0.89[ASN][1000 genomes]
rs6032323	0.89[ASN][1000 genomes]
rs6032324	0.89[ASN][1000 genomes]
rs6032325	0.89[ASN][1000 genomes]
rs6032327	0.89[ASN][1000 genomes]
rs6032328	0.89[ASN][1000 genomes]
rs6032332	0.85[ASN][1000 genomes]
rs6032333	0.85[ASN][1000 genomes]
rs6032334	0.85[ASN][1000 genomes]
rs6032336	0.85[ASN][1000 genomes]
rs6032339	0.89[ASN][1000 genomes]
rs6032340	0.89[ASN][1000 genomes]
rs6032342	0.85[ASN][1000 genomes]
rs6032343	0.89[ASN][1000 genomes]
rs6094162	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6094163	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6094164	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6094165	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6094168	0.89[ASN][1000 genomes]
rs60996959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6104200	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104203	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104204	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104205	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104206	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104207	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104208	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104211	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104212	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6104214	0.96[ASN][1000 genomes]
rs6104218	0.82[ASN][1000 genomes]
rs6104222	0.89[ASN][1000 genomes]
rs61438890	0.89[ASN][1000 genomes]
rs62205644	0.85[ASN][1000 genomes]
rs6514008	0.82[ASN][1000 genomes]
rs6514009	0.85[ASN][1000 genomes]
rs6514010	0.89[ASN][1000 genomes]
rs6514011	0.89[ASN][1000 genomes]
rs6514012	0.89[ASN][1000 genomes]
rs719996	0.89[ASN][1000 genomes]
rs719997	0.89[ASN][1000 genomes]
rs7263748	0.89[ASN][1000 genomes]
rs7265308	0.89[ASN][1000 genomes]
rs7347123	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7361329	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73908128	0.85[ASN][1000 genomes]
rs73908129	0.85[ASN][1000 genomes]
rs73908143	0.85[ASN][1000 genomes]
rs73908145	0.85[ASN][1000 genomes]
rs73908146	0.85[ASN][1000 genomes]
rs73910225	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73910226	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8121615	0.89[ASN][1000 genomes]
rs8121640	0.82[ASN][1000 genomes]
rs8122982	0.89[ASN][1000 genomes]
rs988462	0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
EPPIN	Proximal transcriptional regulation
ENSG00000232135	Proximal transcriptional regulation
EPPIN-WFDC6	Proximal transcriptional regulation
PIGT	Distal transcriptional regulation
WFDC6	RNA binding protein mediated regulation
EPPIN	RNA binding protein mediated regulation
EPPIN-WFDC6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)