SNP Report

Basic Infomation

Name	rs6032280 dbSNP
Location	chr:20,44169104
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 121)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10485456	1.00[EUR][1000 genomes]
rs12479606	1.00[EUR][1000 genomes]
rs12479783	1.00[EUR][1000 genomes]
rs12480391	1.00[CHB][hapmap]
rs12480392	1.00[EUR][1000 genomes]
rs12480402	1.00[CHB][hapmap]
rs12480626	1.00[EUR][1000 genomes]
rs12480997	1.00[EUR][1000 genomes]
rs12481374	1.00[EUR][1000 genomes]
rs1569616	1.00[CHB][hapmap]
rs16990345	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16990390	1.00[EUR][1000 genomes]
rs17348421	1.00[CHB][hapmap]
rs1977096	1.00[CHB][hapmap]
rs2064273	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2064274	1.00[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231830	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231832	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231833	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231834	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231835	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231836	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231837	1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2231838	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2231841	1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2231844	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250860	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2272956	1.00[CHB][hapmap]
rs2272957	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap]
rs2294558	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2868303	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2868305	1.00[CHB][hapmap]
rs2868308	1.00[CHB][hapmap]
rs2868309	1.00[CHB][hapmap]
rs2903786	1.00[CHB][hapmap]
rs2903787	1.00[CHB][hapmap]
rs4278989	1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4608588	1.00[EUR][1000 genomes]
rs4810457	1.00[CHB][hapmap]
rs4812908	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[LWK][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4812910	0.83[ASN][1000 genomes]
rs4812911	0.83[ASN][1000 genomes]
rs4812912	0.83[ASN][1000 genomes]
rs4812919	1.00[EUR][1000 genomes]
rs4812920	1.00[EUR][1000 genomes]
rs4812925	1.00[EUR][1000 genomes]
rs4812941	1.00[EUR][1000 genomes]
rs4812942	1.00[EUR][1000 genomes]
rs57015374	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57263161	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59190933	1.00[EUR][1000 genomes]
rs59279561	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017600	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6017601	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6017602	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.83[ASN][1000 genomes]
rs6017603	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6017604	0.83[ASN][1000 genomes]
rs6017605	1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6017606	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017607	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.87[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017608	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017609	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017610	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6017616	1.00[CHB][hapmap]
rs6017617	1.00[CHB][hapmap]
rs6017618	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6017620	1.00[CHB][hapmap]
rs6017625	1.00[CHB][hapmap]
rs6017626	1.00[CHB][hapmap]
rs6032281	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6032287	1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032288	1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032289	1.00[CHB][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032290	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032291	1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032293	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032294	1.00[CHB][hapmap]
rs6032295	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6032296	1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6032301	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032303	1.00[CHB][hapmap]
rs6032305	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032306	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032310	1.00[CHB][hapmap]
rs6032313	1.00[CHB][hapmap]
rs6032317	1.00[CHB][hapmap]
rs6032318	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032319	1.00[CHB][hapmap]
rs6032321	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032322	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6032336	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs6032339	1.00[CHB][hapmap]
rs6032340	1.00[CHB][hapmap]
rs6032343	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6094162	1.00[CHB][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6094163	1.00[CHB][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6094164	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6094165	1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6094168	1.00[CHB][hapmap]
rs60996959	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6104200	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6104201	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104203	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104204	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104205	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104206	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104207	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104208	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104211	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104212	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104214	0.83[ASN][1000 genomes]
rs6104222	1.00[CHB][hapmap]
rs6514012	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7263748	1.00[CHB][hapmap]
rs7265308	1.00[CHB][hapmap]
rs7347123	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7361329	1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73910225	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73910226	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8122982	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs988462	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
HSPD1P21	Proximal transcriptional regulation
ENSG00000232135	Proximal transcriptional regulation
WFDC6	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)