SNP Report
Name | rs6032280   dbSNP |
---|---|
Location | chr:20,44169104 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10485456 | 1.00[EUR][1000 genomes] |
rs12479606 | 1.00[EUR][1000 genomes] |
rs12479783 | 1.00[EUR][1000 genomes] |
rs12480391 | 1.00[CHB][hapmap] |
rs12480392 | 1.00[EUR][1000 genomes] |
rs12480402 | 1.00[CHB][hapmap] |
rs12480626 | 1.00[EUR][1000 genomes] |
rs12480997 | 1.00[EUR][1000 genomes] |
rs12481374 | 1.00[EUR][1000 genomes] |
rs1569616 | 1.00[CHB][hapmap] |
rs16990345 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs16990390 | 1.00[EUR][1000 genomes] |
rs17348421 | 1.00[CHB][hapmap] |
rs1977096 | 1.00[CHB][hapmap] |
rs2064273 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2064274 | 1.00[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231830 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231832 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231833 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231834 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231835 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231836 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231837 | 1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2231838 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2231841 | 1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2231844 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2250860 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs2272956 | 1.00[CHB][hapmap] |
rs2272957 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap] |
rs2294558 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2868303 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2868305 | 1.00[CHB][hapmap] |
rs2868308 | 1.00[CHB][hapmap] |
rs2868309 | 1.00[CHB][hapmap] |
rs2903786 | 1.00[CHB][hapmap] |
rs2903787 | 1.00[CHB][hapmap] |
rs4278989 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4608588 | 1.00[EUR][1000 genomes] |
rs4810457 | 1.00[CHB][hapmap] |
rs4812908 | 0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[LWK][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4812910 | 0.83[ASN][1000 genomes] |
rs4812911 | 0.83[ASN][1000 genomes] |
rs4812912 | 0.83[ASN][1000 genomes] |
rs4812919 | 1.00[EUR][1000 genomes] |
rs4812920 | 1.00[EUR][1000 genomes] |
rs4812925 | 1.00[EUR][1000 genomes] |
rs4812941 | 1.00[EUR][1000 genomes] |
rs4812942 | 1.00[EUR][1000 genomes] |
rs57015374 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs57263161 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs59190933 | 1.00[EUR][1000 genomes] |
rs59279561 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017600 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6017601 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6017602 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.83[ASN][1000 genomes] |
rs6017603 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
rs6017604 | 0.83[ASN][1000 genomes] |
rs6017605 | 1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6017606 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017607 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.87[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017608 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017609 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017610 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017616 | 1.00[CHB][hapmap] |
rs6017617 | 1.00[CHB][hapmap] |
rs6017618 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6017620 | 1.00[CHB][hapmap] |
rs6017625 | 1.00[CHB][hapmap] |
rs6017626 | 1.00[CHB][hapmap] |
rs6032281 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6032287 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032288 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032289 | 1.00[CHB][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032290 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032291 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032293 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032294 | 1.00[CHB][hapmap] |
rs6032295 | 0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032296 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6032301 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032303 | 1.00[CHB][hapmap] |
rs6032305 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032306 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032310 | 1.00[CHB][hapmap] |
rs6032313 | 1.00[CHB][hapmap] |
rs6032317 | 1.00[CHB][hapmap] |
rs6032318 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032319 | 1.00[CHB][hapmap] |
rs6032321 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032322 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6032336 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
rs6032339 | 1.00[CHB][hapmap] |
rs6032340 | 1.00[CHB][hapmap] |
rs6032343 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs6094162 | 1.00[CHB][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6094163 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6094164 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6094165 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6094168 | 1.00[CHB][hapmap] |
rs60996959 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs6104200 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6104201 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104203 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104204 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104205 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104206 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104207 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104208 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104211 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104212 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6104214 | 0.83[ASN][1000 genomes] |
rs6104222 | 1.00[CHB][hapmap] |
rs6514012 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs7263748 | 1.00[CHB][hapmap] |
rs7265308 | 1.00[CHB][hapmap] |
rs7347123 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7361329 | 1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs73910225 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs73910226 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8122982 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
rs988462 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
HSPD1P21 | Proximal transcriptional regulation |
ENSG00000232135 | Proximal transcriptional regulation |
WFDC6 | Proximal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
GPX7 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014