SNP Report
Basic Infomation
| Name | rs2272957 dbSNP |
|---|---|
| Location | chr:20,44191108 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 161)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12480391 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs12480402 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs12481030 | 0.89[ASN][1000 genomes] |
| rs12481362 | 0.89[ASN][1000 genomes] |
| rs1569613 | 0.96[ASN][1000 genomes] |
| rs1569614 | 0.96[ASN][1000 genomes] |
| rs1569616 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs16990345 | 0.85[ASN][1000 genomes] |
| rs17348421 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs17433181 | 0.89[ASN][1000 genomes] |
| rs1977096 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2064273 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs2064274 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2231830 | 0.81[ASN][1000 genomes] |
| rs2231832 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs2231833 | 0.81[ASN][1000 genomes] |
| rs2231834 | 0.81[ASN][1000 genomes] |
| rs2231835 | 0.81[ASN][1000 genomes] |
| rs2231836 | 0.81[ASN][1000 genomes] |
| rs2231837 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2231838 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs2231841 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2231844 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs2250860 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2272956 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2294558 | 0.85[ASN][1000 genomes] |
| rs2868303 | 0.81[ASN][1000 genomes] |
| rs2868305 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2868306 | 0.96[ASN][1000 genomes] |
| rs2868307 | 0.96[ASN][1000 genomes] |
| rs2868308 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2868309 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2903786 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2903787 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs3817887 | 0.96[ASN][1000 genomes] |
| rs4278989 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4302272 | 0.96[ASN][1000 genomes] |
| rs4810457 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs4812908 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs4812910 | 0.81[ASN][1000 genomes] |
| rs4812911 | 0.81[ASN][1000 genomes] |
| rs4812912 | 0.81[ASN][1000 genomes] |
| rs55642155 | 0.96[ASN][1000 genomes] |
| rs56312640 | 0.96[ASN][1000 genomes] |
| rs56366144 | 1.00[ASN][1000 genomes] |
| rs57015374 | 0.81[ASN][1000 genomes] |
| rs57094822 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs57263161 | 0.81[ASN][1000 genomes] |
| rs57700915 | 0.96[ASN][1000 genomes] |
| rs57911170 | 1.00[ASN][1000 genomes] |
| rs58384175 | 0.96[ASN][1000 genomes] |
| rs59279561 | 0.81[ASN][1000 genomes] |
| rs6017600 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs6017601 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6017602 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6017603 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6017604 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6017605 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6017606 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6017607 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6017608 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6017609 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6017610 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6017612 | 0.89[ASN][1000 genomes] |
| rs6017613 | 0.89[ASN][1000 genomes] |
| rs6017614 | 0.89[ASN][1000 genomes] |
| rs6017615 | 0.89[ASN][1000 genomes] |
| rs6017616 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6017617 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6017618 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6017619 | 0.96[ASN][1000 genomes] |
| rs6017620 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6017621 | 0.96[ASN][1000 genomes] |
| rs6017625 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6017626 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032280 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap] |
| rs6032281 | 0.85[ASN][1000 genomes] |
| rs6032287 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032288 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032289 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032290 | 0.81[ASN][1000 genomes] |
| rs6032291 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032293 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6032294 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6032295 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6032296 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6032300 | 0.89[ASN][1000 genomes] |
| rs6032301 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032302 | 0.89[ASN][1000 genomes] |
| rs6032303 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032305 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032306 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes] |
| rs6032307 | 0.89[ASN][1000 genomes] |
| rs6032309 | 0.89[ASN][1000 genomes] |
| rs6032310 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032311 | 0.89[ASN][1000 genomes] |
| rs6032312 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032313 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6032314 | 0.89[ASN][1000 genomes] |
| rs6032315 | 0.89[ASN][1000 genomes] |
| rs6032316 | 0.89[ASN][1000 genomes] |
| rs6032317 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032318 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032319 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs6032321 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032322 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032323 | 0.96[ASN][1000 genomes] |
| rs6032324 | 0.96[ASN][1000 genomes] |
| rs6032325 | 0.96[ASN][1000 genomes] |
| rs6032327 | 0.96[ASN][1000 genomes] |
| rs6032328 | 0.96[ASN][1000 genomes] |
| rs6032332 | 1.00[ASN][1000 genomes] |
| rs6032333 | 1.00[ASN][1000 genomes] |
| rs6032334 | 1.00[ASN][1000 genomes] |
| rs6032336 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6032339 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032340 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6032342 | 1.00[ASN][1000 genomes] |
| rs6032343 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6094162 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6094163 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6094164 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6094165 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6094168 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6104200 | 0.85[ASN][1000 genomes] |
| rs6104201 | 0.81[ASN][1000 genomes] |
| rs6104203 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104204 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104205 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104206 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104207 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104208 | 0.81[ASN][1000 genomes] |
| rs6104211 | 0.81[ASN][1000 genomes] |
| rs6104212 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.81[ASN][1000 genomes] |
| rs6104214 | 0.81[ASN][1000 genomes] |
| rs6104218 | 0.82[ASN][1000 genomes] |
| rs6104222 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs61438890 | 0.96[ASN][1000 genomes] |
| rs62205644 | 0.93[ASN][1000 genomes] |
| rs6514008 | 0.82[ASN][1000 genomes] |
| rs6514009 | 0.85[ASN][1000 genomes] |
| rs6514010 | 0.89[ASN][1000 genomes] |
| rs6514011 | 0.89[ASN][1000 genomes] |
| rs6514012 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs719996 | 0.96[ASN][1000 genomes] |
| rs719997 | 0.96[ASN][1000 genomes] |
| rs7263748 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7265308 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7347123 | 0.85[ASN][1000 genomes] |
| rs7361329 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs73908128 | 1.00[ASN][1000 genomes] |
| rs73908129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73908143 | 1.00[ASN][1000 genomes] |
| rs73908145 | 1.00[ASN][1000 genomes] |
| rs73908146 | 1.00[ASN][1000 genomes] |
| rs73910225 | 0.81[ASN][1000 genomes] |
| rs73910226 | 0.81[ASN][1000 genomes] |
| rs8121615 | 0.89[ASN][1000 genomes] |
| rs8121640 | 0.89[ASN][1000 genomes] |
| rs8122982 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs988462 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNA5SP485 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014