SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946425	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10946426	0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap]
rs12524678	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12526927	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16884310	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16884399	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884466	1.00[MKK][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs16884468	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16884481	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs201301	0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4144650	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4599624	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs60165883	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)