SNP Report
Basic Infomation
| Name | rs12526927 dbSNP |
|---|---|
| Location | chr:6,21031501 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946425 | 0.89[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs10946426 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs12524678 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs1548145 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16884310 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs16884399 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs16884468 | 1.00[YRI][hapmap] |
| rs16884481 | 1.00[YRI][hapmap] |
| rs201298 | 0.83[JPT][hapmap] |
| rs201301 | 1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs201316 | 0.84[JPT][hapmap] |
| rs201317 | 0.84[JPT][hapmap] |
| rs4144650 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs4599624 | 1.00[YRI][hapmap] |
| rs60165883 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014