SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946425	0.89[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10946426	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11969047	0.80[CEU][hapmap]
rs11969587	0.81[CEU][hapmap]
rs12526927	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs12661235	0.81[CEU][hapmap]
rs1548145	0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs16884399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs201287	0.82[YRI][hapmap]
rs201298	0.81[CEU][hapmap]
rs201299	0.81[CEU][hapmap]
rs201316	0.81[CEU][hapmap]
rs201317	0.81[CEU][hapmap]
rs201318	0.81[CEU][hapmap]
rs201319	0.81[CEU][hapmap]
rs201322	0.81[CEU][hapmap]
rs201324	0.81[CEU][hapmap]
rs201326	0.81[CEU][hapmap]
rs201327	0.81[CEU][hapmap]
rs201329	0.81[CEU][hapmap]
rs201333	0.81[CEU][hapmap]
rs201334	0.81[CEU][hapmap]
rs201338	0.81[CEU][hapmap]
rs62403407	0.83[EUR][1000 genomes]
rs62403409	0.82[EUR][1000 genomes]
rs6456392	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)