SNP Report

Basic Infomation

Name	rs16884468 dbSNP
Location	chr:6,21062786
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11969047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11969587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12524678	1.00[YRI][hapmap]
rs12526927	1.00[YRI][hapmap]
rs12661235	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1548145	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16884310	1.00[YRI][hapmap]
rs16884399	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16884466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884481	1.00[YRI][hapmap]
rs201296	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs201298	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs201299	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs201316	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs201317	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs201318	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs201319	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs201320	0.94[ASN][1000 genomes]
rs201322	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201323	0.90[ASN][1000 genomes]
rs201324	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201325	0.90[ASN][1000 genomes]
rs201326	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201327	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201329	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201331	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs201332	0.90[ASN][1000 genomes]
rs201333	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs201334	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs201335	0.90[ASN][1000 genomes]
rs201336	0.90[ASN][1000 genomes]
rs201337	0.90[ASN][1000 genomes]
rs201338	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2206014	0.93[ASN][1000 genomes]
rs4144650	1.00[YRI][hapmap]
rs4599624	1.00[YRI][hapmap]
rs55655804	0.93[ASN][1000 genomes]
rs56048657	0.96[ASN][1000 genomes]
rs56146146	0.93[ASN][1000 genomes]
rs56163043	0.89[ASN][1000 genomes]
rs56268013	0.96[ASN][1000 genomes]
rs59004130	0.94[ASN][1000 genomes]
rs60165883	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62403407	0.89[ASN][1000 genomes]
rs62403409	0.84[ASN][1000 genomes]
rs62404460	0.93[ASN][1000 genomes]
rs62404461	0.93[ASN][1000 genomes]
rs62404462	0.93[ASN][1000 genomes]
rs62404463	0.93[ASN][1000 genomes]
rs62404465	0.97[ASN][1000 genomes]
rs6456392	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs6456393	0.94[ASN][1000 genomes]
rs6456394	0.90[ASN][1000 genomes]
rs7748652	0.94[ASN][1000 genomes]
rs7752701	0.91[ASN][1000 genomes]
rs7754018	0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)