SNP Report
Basic Infomation
| Name | rs13430006 dbSNP |
|---|---|
| Location | chr:2,219113089 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 77)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169718 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10171839 | 0.89[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs1017698 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
| rs10193383 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
| rs10932763 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10932765 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10932766 | 0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10932769 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs10932772 | 0.85[CHB][hapmap];0.91[JPT][hapmap] |
| rs11554825 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11677953 | 0.98[ASN][1000 genomes] |
| rs11679770 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12612347 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs12694432 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12987130 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12990082 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12992937 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12996912 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12999734 | 0.98[ASN][1000 genomes] |
| rs13003334 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13005100 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs13015410 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13026485 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs13031757 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs13388024 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13392177 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13393821 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13419763 | 0.80[ASN][1000 genomes] |
| rs13429408 | 0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap] |
| rs1399132 | 0.85[CHB][hapmap];0.91[JPT][hapmap] |
| rs1514132 | 0.92[ASN][1000 genomes] |
| rs17653757 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1877714 | 0.80[ASN][1000 genomes] |
| rs2014615 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
| rs2045434 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs2168704 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap] |
| rs2271541 | 0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2292550 | 0.90[CHB][hapmap];0.91[JPT][hapmap] |
| rs2292551 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
| rs2292555 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
| rs2382817 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap] |
| rs2382822 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
| rs28374262 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34544664 | 0.91[ASN][1000 genomes] |
| rs35271699 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3731859 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3817266 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs4674274 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4674275 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4674276 | 0.98[ASN][1000 genomes] |
| rs4674282 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs4674284 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
| rs4791 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs4996257 | 0.80[CHB][hapmap];0.91[JPT][hapmap] |
| rs56364928 | 0.81[EUR][1000 genomes] |
| rs62182795 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6436047 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6436048 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6436049 | 0.92[ASN][1000 genomes] |
| rs6719789 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs6729058 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs6736362 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6738394 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6752254 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6756265 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6758540 | 0.81[ASN][1000 genomes] |
| rs736730 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs736731 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7559428 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
| rs7559525 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
| rs7568092 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7578940 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7581857 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7585702 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap] |
| rs7587220 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
| rs7605980 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs992157 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARPC2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014