SNP Report

Basic Infomation

Name	rs12987130 dbSNP
Location	chr:2,219104990
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169718	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10932762	0.84[AFR][1000 genomes]
rs10932763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10932765	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10932766	0.96[ASN][1000 genomes]
rs10932768	0.82[AFR][1000 genomes]
rs10932769	0.82[AFR][1000 genomes]
rs11554825	0.91[ASN][1000 genomes]
rs11677953	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11679770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682371	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11692780	0.81[AFR][1000 genomes]
rs12612675	0.84[AFR][1000 genomes]
rs12694432	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12987180	0.82[AFR][1000 genomes]
rs12987219	0.82[AFR][1000 genomes]
rs12990082	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12992937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12996912	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12999734	0.94[ASN][1000 genomes]
rs13003334	0.91[ASN][1000 genomes]
rs13005100	0.84[AFR][1000 genomes]
rs13015410	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13031757	0.84[AFR][1000 genomes]
rs13388024	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13392177	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13393821	0.89[ASN][1000 genomes]
rs13430006	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1514132	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17653757	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2045434	0.82[AFR][1000 genomes]
rs2271541	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2271543	0.82[AFR][1000 genomes]
rs2292551	0.82[AFR][1000 genomes]
rs2382818	0.84[AFR][1000 genomes]
rs2382819	0.84[AFR][1000 genomes]
rs28374262	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34544664	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35271699	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3731859	0.93[ASN][1000 genomes]
rs3817266	0.82[AFR][1000 genomes]
rs4672882	0.81[AFR][1000 genomes]
rs4674274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4674275	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4674276	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4674279	0.84[AFR][1000 genomes]
rs4674282	0.82[AFR][1000 genomes]
rs4674283	0.82[AFR][1000 genomes]
rs62182795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6436047	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6436048	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6436049	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6718220	0.84[AFR][1000 genomes]
rs6720105	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6720449	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6727301	0.84[AFR][1000 genomes]
rs6729058	0.82[AFR][1000 genomes]
rs6736362	0.96[ASN][1000 genomes]
rs6738394	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6756265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736730	0.96[ASN][1000 genomes]
rs736731	0.96[ASN][1000 genomes]
rs7559525	0.82[AFR][1000 genomes]
rs7568092	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578940	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7581857	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7585702	0.82[AFR][1000 genomes]
rs7605980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ARPC2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)