SNP Report

Basic Infomation

Name	rs6718220 dbSNP
Location	chr:2,219066518
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10932761	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10932762	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10932763	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11679770	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11682371	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12987130	0.84[AFR][1000 genomes]
rs12992937	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13005100	0.86[LWK][hapmap];0.94[YRI][hapmap]
rs13031757	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs1514132	0.82[AFR][1000 genomes]
rs1877715	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap]
rs2045434	0.86[LWK][hapmap];0.94[YRI][hapmap]
rs2292550	0.88[YRI][hapmap]
rs2292551	0.88[YRI][hapmap]
rs34544664	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3817266	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs4674270	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4674274	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4674275	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4674282	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs62182795	0.84[AFR][1000 genomes]
rs6436047	0.87[ASW][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap]
rs6436048	0.87[ASW][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap]
rs6720105	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720449	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6729058	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs6738394	0.94[YRI][hapmap]
rs6756265	0.86[AFR][1000 genomes]
rs7559428	0.88[YRI][hapmap]
rs7559525	0.88[YRI][hapmap]
rs7568092	0.85[AFR][1000 genomes]
rs7578940	0.81[MKK][hapmap];0.82[EUR][1000 genomes]
rs7581857	0.85[AFR][1000 genomes]
rs7585702	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs7605980	0.87[ASW][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ARPC2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
XRCC5	SCAN
ARPC2	SCAN
ARPC2	SCAN