SNP Report

Basic Infomation

Name	rs11682371 dbSNP
Location	chr:2,219079513
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10932761	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10932762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10932763	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11679770	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12987130	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12992937	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13005100	0.94[YRI][hapmap]
rs13031757	0.88[YRI][hapmap]
rs1514132	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1877715	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2045434	0.94[YRI][hapmap]
rs2292550	0.89[YRI][hapmap]
rs2292551	0.88[YRI][hapmap]
rs34544664	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3817266	0.88[YRI][hapmap]
rs4674274	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4674275	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4674282	0.88[YRI][hapmap]
rs62182795	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6436047	0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs6436048	0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs6718220	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6729058	0.88[YRI][hapmap]
rs6738394	0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs6756265	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7559428	0.84[YRI][hapmap]
rs7559525	0.88[YRI][hapmap]
rs7568092	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7578940	0.84[EUR][1000 genomes]
rs7581857	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7585702	0.88[YRI][hapmap]
rs7605980	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ARPC2	Proximal transcriptional regulation
CTDSP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)