SNP Report
Basic Infomation
| Name | rs1877715 dbSNP |
|---|---|
| Location | chr:2,219052546 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10932761 | 0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs10932762 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs11682371 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs12612347 | 0.86[ASW][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs13026485 | 0.86[ASW][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs4674270 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56364928 | 0.85[AFR][1000 genomes] |
| rs6718220 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap] |
| rs6720105 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs6720449 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238428 | Proximal transcriptional regulation |
| ARPC2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014