SNP Report
Basic Infomation
| Name | rs56364928 dbSNP |
|---|---|
| Location | chr:2,219059058 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169718 | 0.81[EUR][1000 genomes] |
| rs10171839 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10932765 | 0.81[EUR][1000 genomes] |
| rs12612347 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12694432 | 0.84[EUR][1000 genomes] |
| rs12990082 | 0.81[EUR][1000 genomes] |
| rs12996912 | 0.81[EUR][1000 genomes] |
| rs13015410 | 0.81[EUR][1000 genomes] |
| rs13026485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13388024 | 0.81[EUR][1000 genomes] |
| rs13392177 | 0.81[EUR][1000 genomes] |
| rs13393821 | 0.86[EUR][1000 genomes] |
| rs13430006 | 0.81[EUR][1000 genomes] |
| rs17653757 | 0.81[EUR][1000 genomes] |
| rs1877715 | 0.85[AFR][1000 genomes] |
| rs2271541 | 0.84[EUR][1000 genomes] |
| rs28374262 | 0.81[EUR][1000 genomes] |
| rs6719789 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6752254 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARPC2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014