SNP Report
Basic Infomation
| Name | rs10171839 dbSNP |
|---|---|
| Location | chr:2,219051314 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169718 | 0.89[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs10932765 | 0.89[CEU][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs10932766 | 0.91[GIH][hapmap];0.86[JPT][hapmap] |
| rs11554825 | 0.91[GIH][hapmap];0.86[JPT][hapmap] |
| rs12612347 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12694432 | 0.89[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs13026485 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13392177 | 0.89[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs13393821 | 0.89[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap] |
| rs13430006 | 0.89[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs2271541 | 0.84[CEU][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap] |
| rs3731859 | 0.91[GIH][hapmap];0.86[JPT][hapmap] |
| rs4674274 | 0.81[JPT][hapmap] |
| rs4674275 | 0.81[JPT][hapmap] |
| rs56364928 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6436047 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs6436048 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs6719789 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6738394 | 0.81[JPT][hapmap] |
| rs6752254 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs736730 | 0.91[GIH][hapmap];0.86[JPT][hapmap] |
| rs736731 | 0.91[GIH][hapmap];0.86[JPT][hapmap] |
| rs7578940 | 0.82[GIH][hapmap];0.80[JPT][hapmap] |
| rs7605980 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238428 | Proximal transcriptional regulation |
| ARPC2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014