SNP Report

Basic Infomation

Name	rs12999734 dbSNP
Location	chr:2,219121528
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169718	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10932763	0.90[ASN][1000 genomes]
rs10932765	0.96[ASN][1000 genomes]
rs10932766	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11554825	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11677953	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11679770	0.93[ASN][1000 genomes]
rs12694432	0.91[ASN][1000 genomes]
rs12987130	0.94[ASN][1000 genomes]
rs12990082	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12992937	0.90[ASN][1000 genomes]
rs12996912	0.96[ASN][1000 genomes]
rs13003334	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13015410	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13388024	0.96[ASN][1000 genomes]
rs13392177	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13393821	0.87[ASN][1000 genomes]
rs13419763	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13427681	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13429408	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13430006	0.98[ASN][1000 genomes]
rs1514132	0.90[ASN][1000 genomes]
rs17653757	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1877712	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2168704	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2271541	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2292553	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28374262	0.96[ASN][1000 genomes]
rs34544664	0.89[ASN][1000 genomes]
rs35271699	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3731859	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4674274	0.92[ASN][1000 genomes]
rs4674275	0.94[ASN][1000 genomes]
rs4674276	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4674280	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4791	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55827343	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56109829	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56344368	0.88[EUR][1000 genomes]
rs62182795	0.94[ASN][1000 genomes]
rs62182826	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6436047	0.94[ASN][1000 genomes]
rs6436048	0.93[ASN][1000 genomes]
rs6436049	0.90[ASN][1000 genomes]
rs6736362	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6738394	0.94[ASN][1000 genomes]
rs6756265	0.94[ASN][1000 genomes]
rs736730	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736731	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7568092	0.94[ASN][1000 genomes]
rs7578940	0.90[ASN][1000 genomes]
rs7581857	0.94[ASN][1000 genomes]
rs7605980	0.94[ASN][1000 genomes]
rs992157	0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
GPBAR1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)