SNP Report

Basic Infomation

Name	rs12996097 dbSNP
Location	chr:2,102963628
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1054096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11465567	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11465572	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11465597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11465623	1.00[CEU][hapmap]
rs11465673	1.00[CEU][hapmap]
rs11465724	0.85[CEU][hapmap]
rs12987782	1.00[JPT][hapmap]
rs12989197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12999517	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12999542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001301	1.00[JPT][hapmap]
rs13006323	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13007174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007819	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013436	0.89[ASN][1000 genomes]
rs13014044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014644	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016771	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13022799	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13028993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388541	0.85[CEU][hapmap]
rs1558653	0.85[CEU][hapmap]
rs17027293	0.85[CEU][hapmap]
rs17027295	0.85[CEU][hapmap]
rs17027352	0.85[CEU][hapmap]
rs17651485	1.00[CEU][hapmap]
rs17695648	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17772203	0.85[CEU][hapmap]
rs17821875	1.00[CEU][hapmap]
rs1946131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080315	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2080316	0.87[CEU][hapmap]
rs3755277	0.89[ASN][1000 genomes]
rs3755278	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3771179	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3849363	0.87[CEU][hapmap]
rs4134504	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6543145	0.87[CEU][hapmap]
rs6543147	0.87[CEU][hapmap]
rs6543148	0.85[CEU][hapmap]
rs6736822	0.87[CEU][hapmap]
rs6737325	0.85[CEU][hapmap]
rs6741464	0.87[CEU][hapmap]
rs6747752	0.87[CEU][hapmap]
rs6751282	0.87[CEU][hapmap]
rs6751666	0.85[CEU][hapmap]
rs6753066	0.87[CEU][hapmap]
rs6756407	1.00[CEU][hapmap]
rs6756536	0.87[CEU][hapmap]
rs7566613	0.85[CEU][hapmap]
rs7582118	0.87[CEU][hapmap]
rs7607856	0.87[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
IL1RL1	RNA binding protein mediated regulation
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)