SNP Report

Basic Infomation

Name	rs2080315 dbSNP
Location	chr:2,103104288
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1054096	1.00[JPT][hapmap]
rs11465597	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11465623	0.82[CEU][hapmap]
rs11900296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12987782	1.00[JPT][hapmap]
rs12989197	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12996097	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12999517	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12999542	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13001301	1.00[JPT][hapmap]
rs13016771	1.00[JPT][hapmap]
rs13022799	1.00[JPT][hapmap]
rs13028993	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13385391	0.83[EUR][1000 genomes]
rs13388541	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1558653	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs17027293	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027295	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027352	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17651485	0.85[CEU][hapmap]
rs17695648	1.00[JPT][hapmap]
rs17772203	1.00[CEU][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs17775237	1.00[CEU][hapmap]
rs17775404	1.00[CEU][hapmap]
rs17821875	0.85[CEU][hapmap]
rs1880001	0.83[EUR][1000 genomes]
rs1946131	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2080316	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3755278	1.00[JPT][hapmap]
rs3771179	1.00[JPT][hapmap]
rs3849363	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs41348650	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60059565	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61731286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6543145	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6543147	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6543148	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736822	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6737325	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6741464	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6747752	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6751282	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6751666	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753066	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756407	0.85[CEU][hapmap]
rs6756536	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7566613	0.83[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7576682	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7582118	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7607856	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A2	Distal transcriptional regulation
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)