SNP Report
Basic Infomation
| Name | rs17775404 dbSNP |
|---|---|
| Location | chr:2,103257932 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13388541 | 1.00[CEU][hapmap] |
| rs1558653 | 1.00[CEU][hapmap] |
| rs17027293 | 1.00[CEU][hapmap] |
| rs17027295 | 1.00[CEU][hapmap] |
| rs17027352 | 1.00[CEU][hapmap] |
| rs17772203 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17775237 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17821875 | 0.85[CEU][hapmap] |
| rs2080315 | 1.00[CEU][hapmap] |
| rs2080316 | 1.00[CEU][hapmap] |
| rs3849363 | 1.00[CEU][hapmap] |
| rs41348650 | 0.85[CEU][hapmap] |
| rs6543145 | 1.00[CEU][hapmap] |
| rs6543147 | 1.00[CEU][hapmap] |
| rs6543148 | 1.00[CEU][hapmap] |
| rs6736822 | 1.00[CEU][hapmap] |
| rs6737325 | 1.00[CEU][hapmap] |
| rs6741464 | 1.00[CEU][hapmap] |
| rs6747752 | 1.00[CEU][hapmap] |
| rs6751282 | 1.00[CEU][hapmap] |
| rs6751666 | 1.00[CEU][hapmap] |
| rs6753066 | 1.00[CEU][hapmap] |
| rs6756536 | 1.00[CEU][hapmap] |
| rs7566613 | 1.00[CEU][hapmap] |
| rs7576682 | 1.00[CEU][hapmap] |
| rs7582118 | 1.00[CEU][hapmap] |
| rs7607856 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Distal transcriptional regulation |
| SLC9A2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C1orf109 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014