SNP Report
Basic Infomation
| Name | rs12295393 dbSNP |
|---|---|
| Location | chr:11,64881839 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227112 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11539360 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11546366 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12099121 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12270532 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12271615 | 0.81[YRI][hapmap] |
| rs12281324 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12281698 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12286839 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12288247 | 0.90[YRI][hapmap] |
| rs2276021 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs3782095 | 0.90[YRI][hapmap] |
| rs61736623 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7105558 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7105865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7936473 | 0.89[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000254501 | Proximal transcriptional regulation |
| ENSG00000255173 | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| TM7SF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014