SNP Report
Basic Infomation
| Name | rs12288247 dbSNP |
|---|---|
| Location | chr:11,64821067 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227112 | 0.90[YRI][hapmap] |
| rs12099121 | 0.90[YRI][hapmap] |
| rs12270532 | 0.90[YRI][hapmap] |
| rs12271615 | 1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs12279247 | 0.87[AFR][1000 genomes] |
| rs12280476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12281324 | 0.90[YRI][hapmap] |
| rs12281698 | 0.90[YRI][hapmap] |
| rs12282348 | 1.00[ASW][hapmap] |
| rs12285030 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12291307 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12295393 | 0.90[YRI][hapmap] |
| rs35983251 | 0.95[AFR][1000 genomes] |
| rs3782095 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs56368078 | 0.87[AFR][1000 genomes] |
| rs57731342 | 0.87[AFR][1000 genomes] |
| rs7110646 | 0.92[AFR][1000 genomes] |
| rs7116674 | 0.91[LWK][hapmap] |
| rs7926131 | 0.89[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs7933704 | 1.00[AMR][1000 genomes] |
| rs7935441 | 0.95[AFR][1000 genomes] |
| rs7936473 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000266123 | Proximal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| NAALADL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014