SNP Report
Basic Infomation
| Name | rs12271615 dbSNP |
|---|---|
| Location | chr:11,64937695 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227112 | 0.81[YRI][hapmap] |
| rs12099121 | 0.81[YRI][hapmap] |
| rs12270532 | 0.81[YRI][hapmap] |
| rs12279247 | 0.95[AFR][1000 genomes] |
| rs12280476 | 0.82[AFR][1000 genomes] |
| rs12281324 | 0.81[YRI][hapmap] |
| rs12281698 | 0.81[YRI][hapmap] |
| rs12282348 | 1.00[ASW][hapmap] |
| rs12285030 | 0.82[AFR][1000 genomes] |
| rs12288247 | 1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs12295393 | 0.81[YRI][hapmap] |
| rs35983251 | 0.87[AFR][1000 genomes] |
| rs3782095 | 0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs56368078 | 0.95[AFR][1000 genomes] |
| rs57731342 | 0.95[AFR][1000 genomes] |
| rs586768 | 1.00[MKK][hapmap];0.90[YRI][hapmap] |
| rs7110646 | 0.84[AFR][1000 genomes] |
| rs7116674 | 0.83[LWK][hapmap] |
| rs7926131 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs7935441 | 0.87[AFR][1000 genomes] |
| rs7936473 | 1.00[ASW][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPDYC | Proximal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| HIGD1AP10 | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014