SNP Report
Basic Infomation
| Name | rs11539360 dbSNP |
|---|---|
| Location | chr:11,64880743 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227112 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11546366 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12099121 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12270532 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12281324 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12281698 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12286839 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12295393 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2276021 | 0.86[EUR][1000 genomes] |
| rs61736623 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7105558 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7105865 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TM7SF2 | Proximal transcriptional regulation |
| ENSG00000254501 | Proximal transcriptional regulation |
| ENSG00000255173 | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| MCMBP | Distal transcriptional regulation |
| SEC23IP | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| TM7SF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014