SNP Report
Basic Infomation
| Name | rs12285283 dbSNP |
|---|---|
| Location | chr:11,63775532 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231665 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231673 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11494059 | 0.83[AMR][1000 genomes] |
| rs12277386 | 1.00[AMR][1000 genomes] |
| rs12277838 | 1.00[AMR][1000 genomes] |
| rs12288290 | 1.00[AMR][1000 genomes] |
| rs17403349 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34689425 | 0.83[AMR][1000 genomes] |
| rs55951521 | 1.00[EUR][1000 genomes] |
| rs55956041 | 1.00[EUR][1000 genomes] |
| rs56217591 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57864399 | 1.00[AMR][1000 genomes] |
| rs57868637 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59502039 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61653882 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7106510 | 1.00[EUR][1000 genomes] |
| rs7929867 | 1.00[AMR][1000 genomes] |
| rs7933899 | 1.00[AMR][1000 genomes] |
| rs7938631 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9326430 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9630214 | 1.00[AMR][1000 genomes] |
| rs9630215 | 1.00[AMR][1000 genomes] |
| rs9888177 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014