SNP Report
Basic Infomation
| Name | rs12277386 dbSNP |
|---|---|
| Location | chr:11,63713698 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897460 | 1.00[EUR][1000 genomes] |
| rs11231632 | 1.00[EUR][1000 genomes] |
| rs11231634 | 1.00[EUR][1000 genomes] |
| rs11231665 | 1.00[AMR][1000 genomes] |
| rs11231673 | 1.00[AMR][1000 genomes] |
| rs11494059 | 0.83[AMR][1000 genomes] |
| rs12099085 | 1.00[EUR][1000 genomes] |
| rs12271959 | 1.00[EUR][1000 genomes] |
| rs12277838 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12285283 | 1.00[AMR][1000 genomes] |
| rs12288290 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12291042 | 1.00[EUR][1000 genomes] |
| rs12295918 | 1.00[EUR][1000 genomes] |
| rs13377315 | 1.00[EUR][1000 genomes] |
| rs17403349 | 1.00[AMR][1000 genomes] |
| rs320110 | 1.00[EUR][1000 genomes] |
| rs34689425 | 0.98[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4375445 | 1.00[EUR][1000 genomes] |
| rs56217591 | 1.00[AMR][1000 genomes] |
| rs57219930 | 1.00[EUR][1000 genomes] |
| rs57864399 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57868637 | 1.00[AMR][1000 genomes] |
| rs58678024 | 1.00[EUR][1000 genomes] |
| rs59423787 | 1.00[EUR][1000 genomes] |
| rs59502039 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60107756 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61475860 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61653882 | 1.00[AMR][1000 genomes] |
| rs7110433 | 1.00[EUR][1000 genomes] |
| rs7929867 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7933899 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7938631 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7948681 | 1.00[EUR][1000 genomes] |
| rs7952003 | 1.00[EUR][1000 genomes] |
| rs9326430 | 1.00[AMR][1000 genomes] |
| rs9630214 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9630215 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9888136 | 1.00[EUR][1000 genomes] |
| rs9888177 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255651 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| NAA40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014