SNP Report
Basic Infomation
| Name | rs55951521 dbSNP |
|---|---|
| Location | chr:11,63765247 |
| Allele | C/G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231665 | 1.00[EUR][1000 genomes] |
| rs11231673 | 1.00[EUR][1000 genomes] |
| rs12285283 | 1.00[EUR][1000 genomes] |
| rs17403349 | 1.00[EUR][1000 genomes] |
| rs473578 | 1.00[ASN][1000 genomes] |
| rs55956041 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56217591 | 1.00[EUR][1000 genomes] |
| rs57868637 | 1.00[EUR][1000 genomes] |
| rs59382023 | 1.00[ASN][1000 genomes] |
| rs59502039 | 1.00[EUR][1000 genomes] |
| rs60472198 | 1.00[ASN][1000 genomes] |
| rs60960641 | 1.00[ASN][1000 genomes] |
| rs61653882 | 1.00[EUR][1000 genomes] |
| rs7106510 | 1.00[EUR][1000 genomes] |
| rs7938631 | 1.00[EUR][1000 genomes] |
| rs9326430 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OTUB1 | Proximal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| OTUB1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014