SNP Report

Basic Infomation

Name	rs12140231 dbSNP
Location	chr:1,200997930
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11804082	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12029212	0.80[JPT][hapmap]
rs12032370	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs12118246	1.00[MEX][hapmap]
rs12121970	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12127882	0.83[EUR][1000 genomes]
rs12139527	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12145340	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs16847508	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2279944	1.00[CEU][hapmap];0.80[JPT][hapmap];0.94[EUR][1000 genomes]
rs2297905	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs3818873	0.80[JPT][hapmap]
rs41269929	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55861132	0.88[EUR][1000 genomes]
rs56770229	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57477179	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57778851	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60112590	0.93[EUR][1000 genomes]
rs6663263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6692235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6692427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74138815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000234132	Distal transcriptional regulation
KIF21B	Distal transcriptional regulation
ENSG00000229191	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)