SNP Report
Basic Infomation
| Name | rs12118246 dbSNP |
|---|---|
| Location | chr:1,200874847 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12140231 | 1.00[MEX][hapmap] |
| rs12145340 | 0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes] |
| rs16847508 | 1.00[GIH][hapmap] |
| rs28684993 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45547233 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55973213 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58975754 | 0.88[AMR][1000 genomes] |
| rs60257241 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61389587 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6663263 | 1.00[MEX][hapmap] |
| rs6667956 | 1.00[MEX][hapmap] |
| rs6692235 | 1.00[MEX][hapmap] |
| rs6692427 | 1.00[MEX][hapmap] |
| rs7528977 | 0.94[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf106 | Proximal transcriptional regulation |
| C1orf106 | Distal transcriptional regulation |
| C1orf106 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CFHR1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014